Australian data resources for wheat and Zymoseptoria tritici (Septoria tritici blotch)

Advancing genetic solutions for crop protection in Australian wheat: identifying novel and optimal combinations of APR resistance genes to Septoria tritici blotch. Wheat is one of the most important crops in Australia, providing food, feed and export income. However, wheat production is threatened by various diseases, such as Septoria tritici blotch (STB), a foliar disease of wheat caused by the fungus Zymoseptoria tritici. This disease is prevalent in medium-high rainfall zones of Australia. If left unmanaged, STB can result in yield losses of up to 50% and traditional control by fungicides is estimated to cost the industry $121 million per year is less effective due to fungicide resistance evolving in Australia to some common triazoles and strobilurin. One way to manage this disease is to use wheat varieties resistant to STB. However, 10 out of 17 genes tested for adult plant resistance (APR) performance in field experiments over the past 8 years are no longer effective in Australia. These include; Stb2/11/WW, Stb3, Stb4, Stb6, Stb7/12, Stb9 and Stb18. Therefore, identifying new sources of APR genes is essential for developing wheat varieties with better agronomic performance. Adult plant resistance (APR) genes confer partial but durable resistance to the disease at later stages of plant development. They are preferred in breeding programs because of their flexibility in integrated disease management (IDM) systems and their durability of resistance. These projects aim to discover and transfer novel APR genes for STB resistance into adapted wheat varieties while also determining the optimal combinations of existing effective APR genes and remove the barriers to their adoption by Australian wheat breeding programs. The resources available on this site are developed through research partnerships between GRDC and NSW DPI. There are resources provided on this page which are available to download as well as metadata for resources which have restricted access and will be made available only on request.

Data Source:

Data.NSW

Tags

Data and Resources

CSV

Popular

Published_Metadata_wheat_zymo_NSWDPI.csv

Metadata of experiments conducted during completed projects available on request.

Preview

Download

CKAN Data API

Access resource data via a web API with powerful query support. Further information in the main CKAN Data API and DataStore documentation.

Code examples:

curl JavaScript PowerShell Python R

Querying

Get 5 results containing "jones" in any field:

curl https://data.nsw.gov.au/data/en/api/action/datastore_search \
  -H"Authorization:$API_TOKEN" -d '
{
  "resource_id": "21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
  "limit": 5,
  "q": "jones"
}'

const resp = await fetch(`https://data.nsw.gov.au/data/en/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({
        resource_id: '21fc8244-3fc1-4931-9e92-03fe1f4c9a2a',
        limit: 5,
        q: 'jones'
    })
})
await resp.json()

$json = @'
{
  "resource_id": "21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
  "limit": 5,
  "q": "jones"
}
'@
$response = Invoke-RestMethod https://data.nsw.gov.au/data/en/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

(using the ckanapi client library)

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://data.nsw.gov.au/data/en/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
    limit=5,
    q="jones",
)
print(result['records'])

library(httr2)

req <- request("https://data.nsw.gov.au/data/en/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id = '21fc8244-3fc1-4931-9e92-03fe1f4c9a2a',
        limit = 5,
        q = 'jones'))
    req_perform %>% 
    resp_body_json

Get results with either "watershed" or "survey" as subject and "active" as its stage:

curl https://data.nsw.gov.au/data/en/api/action/datastore_search \
-H"Authorization:$API_TOKEN" -d '
{
"resource_id": "21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}'

const resp = await fetch(`https://data.nsw.gov.au/data/en/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({resource_id: '21fc8244-3fc1-4931-9e92-03fe1f4c9a2a', filters: {
        subject: ['watershed', 'survey'],
        stage: 'active'
    }})})
await resp.json()

$json = @'
{
  "resource_id": "21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}
'@
$response = Invoke-RestMethod https://data.nsw.gov.au/data/en/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://data.nsw.gov.au/data/en/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="21fc8244-3fc1-4931-9e92-03fe1f4c9a2a",
    filters={
      "subject": ["watershed", "survey"],
      "stage": "active",
    },
)
print(result['records'])

library(httr2)

req <- request("https://data.nsw.gov.au/data/en/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id='21fc8244-3fc1-4931-9e92-03fe1f4c9a2a', 
        filters = list(
            subject = list("watershed", "survey"), 
            stage = "active")))
    req_perform %>% 
    resp_body_json

Using the API with this Web Browser

Some API endpoints may be accessed using a GET query string.

Query example (first 5 results)

https://data.nsw.gov.au/data/en/api/action/datastore_search?resource_id=21fc8244-3fc1-4931-9e92-03fe1f4c9a2a&limit=5

Query example (results containing 'jones')

https://data.nsw.gov.au/data/en/api/action/datastore_search?resource_id=21fc8244-3fc1-4931-9e92-03fe1f4c9a2a&q=jones

CSV

Popular

Restricted_access_metadata_wheat_zymo_NSWDPI.csv

Metadata of experiments conducted during current projects, access requests considered case by case

Preview

Download

CKAN Data API

Access resource data via a web API with powerful query support. Further information in the main CKAN Data API and DataStore documentation.

Code examples:

curl JavaScript PowerShell Python R

Querying

Get 5 results containing "jones" in any field:

curl https://data.nsw.gov.au/data/en/api/action/datastore_search \
  -H"Authorization:$API_TOKEN" -d '
{
  "resource_id": "6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
  "limit": 5,
  "q": "jones"
}'

const resp = await fetch(`https://data.nsw.gov.au/data/en/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({
        resource_id: '6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8',
        limit: 5,
        q: 'jones'
    })
})
await resp.json()

$json = @'
{
  "resource_id": "6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
  "limit": 5,
  "q": "jones"
}
'@
$response = Invoke-RestMethod https://data.nsw.gov.au/data/en/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

(using the ckanapi client library)

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://data.nsw.gov.au/data/en/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
    limit=5,
    q="jones",
)
print(result['records'])

library(httr2)

req <- request("https://data.nsw.gov.au/data/en/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id = '6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8',
        limit = 5,
        q = 'jones'))
    req_perform %>% 
    resp_body_json

Get results with either "watershed" or "survey" as subject and "active" as its stage:

curl https://data.nsw.gov.au/data/en/api/action/datastore_search \
-H"Authorization:$API_TOKEN" -d '
{
"resource_id": "6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}'

const resp = await fetch(`https://data.nsw.gov.au/data/en/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({resource_id: '6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8', filters: {
        subject: ['watershed', 'survey'],
        stage: 'active'
    }})})
await resp.json()

$json = @'
{
  "resource_id": "6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}
'@
$response = Invoke-RestMethod https://data.nsw.gov.au/data/en/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://data.nsw.gov.au/data/en/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8",
    filters={
      "subject": ["watershed", "survey"],
      "stage": "active",
    },
)
print(result['records'])

library(httr2)

req <- request("https://data.nsw.gov.au/data/en/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id='6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8', 
        filters = list(
            subject = list("watershed", "survey"), 
            stage = "active")))
    req_perform %>% 
    resp_body_json

Using the API with this Web Browser

Some API endpoints may be accessed using a GET query string.

Query example (first 5 results)

https://data.nsw.gov.au/data/en/api/action/datastore_search?resource_id=6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8&limit=5

Query example (results containing 'jones')

https://data.nsw.gov.au/data/en/api/action/datastore_search?resource_id=6ab350d3-9a01-4900-a4c2-ac1a53c2bdc8&q=jones

Data Preview: Restricted_access_metadata_wheat_zymo_NSWDPI.csv

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Additional Information

Field	Value
Title	Australian data resources for wheat and Zymoseptoria tritici (Septoria tritici blotch)
Date Published	21/08/2023
Last Updated	29/04/2024
Publisher/Agency	Department of Primary Industries (DPI)
Licence	License Not Specified
Update Frequency	Annually
Contact Point	NSW DPI nsw.agriculture@dpi.nsw.gov.au
Temporal Coverage	01/01/2015 - 12/01/2028
Data Portal	Data.NSW